top of page
PL-ExM.png

29.  Proximity Labeling Expansion Microscopy (PL-ExM) resolves structure of the interactome

       S. Park, X. Wang, X. Li, X. Huang, K.C. Fong, C. Yu, A.A. Tran, L. Scipioni, Z. Dai,

       L. Huang, X. Shi
       [bioRxiv Nov. 13, 2023]

28. Label-Retention Expansion Microscopy (LR-ExM) for Enhanced Fluorescent Signals using 

      Trifunctional Probes

      Y. Zhuang, X. Shi

      Curr Protoc. 2024 Jan;4(1):e973. doi: 10.1002/cpz1.973.  

cilia review.png

27. Expansion Microscopy of Ciliary Proteins
      
S. Park, X. Shi
      Cilia: Methods and Protocols, 79-88 (2023)

      Part of the Methods in Molecular Biology book series (MIMB, volume 2725)

LR-ExM review.png

26. Expansion microscopy: A chemical approach for super-resolution microscopy

      Y. Zhuang, X. Shi

      Current Opinion in Structural Biology 81, 102614 (2023)

EML4-ALK-puncta.png

21. Kinase-mediated RAS signaling via membraneless cytoplasmic protein granules

      A. Tulpule*, J. Guan*, D.S. Neel*, H.R. Allegakoen, Y.P. Lin, D. Brown, Y.-T. Chou, A. Heslin, N. 

      Chatterjee, S. Perati, S. Menon, T.A. Nguyen, J. Debnath, A.D. Ramirez, X. Shi, B. Yang, S. Feng,

      S. Makhija, B. Huang#, T.G. Bivona#

      Cell,184, 2649 (2021) 

Screen Shot 2020-09-02 at 12.45.55 AM.pn

20. Neurotoxic microglia promote TDP-43 proteinopathy in progranulin deficiency

      J. Zhang, D. Velmeshev, K. Hashimoto, Y.-H. Huang, J. W. Hofmann, X. Shi, J. Chen, A. M. Leidal,

      J. G. Dishart, M. K. Cahill, K. W. Kelley, S. A. Liddelow, W. W. Seeley, B. L. Miller, T. C. Walther,

      R. V. Farese Jr., J. P. Taylor, E. M. Ullian, B. Huang, J. Debnath, T. Wittmann, A. R. Kriegstein

      & E. J. Huang

      Nature, 588, 459 (2020)

Screen Shot 2020-10-19 at 1.03.19 AM.png

19. Nanotopography enhances dynamic remodeling of tight junction proteins through cytosolic 

      complexes

      X. Huang, X. Shi, M.E. Hansen, C.L. Nemeth, A. Ceili, B. Huang, T. Mauro, M. Koval, 

      T.A. Desai 

      ACS Nano, 14, 13192 (2020).

Screen Shot 2022-11-28 at 3.16.48 PM.png

25. Label-Retention Expansion Microscopy (LR-ExM) Enables Super-Resolution Imaging and 

      High-Efficiency Labeling

      S. Park, Y. Zhuang, X. Shi

      joVE. 188, e63793 (2022)

Over-expressed LaminA Network and Nuclear Pores.png

24. Label-retention expansion microscopy

      X. Shi * #, Q. Li *, Z. Dai, A.A.Tran, S. Feng, A.D. Ramirez, Z. Lin, X. Wang, T.T. Chow, J. Chen, 

      D. Kumar, A. McColloch, J.F. Reiter, E.J. Huang, I.B. Seiple #, B. Huang #

      J. Cell Biol. 220 (9): e202105067 (2021). [bioRxiv 2019]

      ✶✶  image on the table of contents page âœ¶âœ¶  |  [highlighted by PreLight]

24.png

23. Polarized endosome dynamics engage cytoplasmic Par-3 that recruits dynein during 

      asymmetric cell division

      X. Zhao, J.Q. Garcia, K. Tong, X. Chen, B. Yang, Q. Li, Z. Dai, X. Shi, I.B. Seiple, B. Huang, S. Guo

      Science Advance, 7, eabg1244 (2021) 

CEP190.png

22. A ciliopathy complex builds distal appendages to initiate ciliogenesis

      D. Kumar, A. Rains, V. Herranz-Pérez, Q. Lu, X. Shi, D.L. Swaney, E. Stevenson, N.J. Krogan, 

      B. Huang, C. Westlake, J.M. Garcia-Verdugo, B. Yoder, J.F. Reiter

      J. Cell Biol. 220 (9): e202011133 (2021)[bioRxiv 2021]

Before UCI

2019_DeformedAlignment.jpg

18.  Deformed alignment of super-resolution images for semi-flexible structures

       â€‹X. Shi, G. Garcia, Y. Wang, J. Reiter, B. Huang

       PLoS ONE, 14, e0212735 (2019)

jpca-COVER.jpg

17.  Branching ratio measurements of the predissociation of 12C16O by time-slice velocity-map \

       ion imaging in the energy region from 106,250 to 107,800 cm-1. 

       X. Shi*, H. Gao*, Q.-Z. Yin, Y.-C. Chang, R. C. Wiens, W. M. Jackson, C. Y. Ng

       J. Phys. Chem. A, 122, 8136 (2018)

       âœ¶âœ¶ cover image âœ¶âœ¶ 

2018_Telomere.jpg

16.  Local enrichment of HP1alpha at telomeres alters their structure and regulation of telomere 

       protection         

       T. Chow, X. Shi, J.H. Wei, J. Guan, G. Stadler, B. Huang, E. Blackburn       

       Nat. Commun., 9, 3583 (2018)

Screen Shot 2018-08-20 at 4.27.56 PM.png

15.  Super-resolution microscopy reveals that disruption of ciliary transition zone architecture is a cause of

       Joubert syndrome
       
X. Shi*, G. Garcia*, J. C. Van De Weghe, R. McGorty, G. J. Pazour, D. Doherty, 
B. Huang#, J. F. Reiter#
       Nat. Cell Biol., 19, 1178 (2017). [bioRxiv 2017]
​       âœ¶âœ¶ cover image ✶✶

14.jpg

14.  Branching Ratios in Vacuum Ultraviolet Photodissociation of CO and N2: Implications for 

       Oxygen and Nitrogen Isotopic Compositions of the Solar Nebula

       X. Shi, Q.-Z. Yin, H. Gao, Y. C. Chang, W. M. Jackson, R. Wiensand C. Y. Ng

       Astrophys. J., 850, 48 (2017)

13.jpg

13.  Tracking multiple genomic elements using correlative CRISPR imaging and sequential DNA FISH

       J. Guan, H. Liu, X. Shi, S. Feng, B. Huang

       Biophys. J., 112,1077 (2017) 

       âœ¶âœ¶ New and Notable âœ¶âœ¶

12.  A High-Resolution Vacuum Ultraviolet Laser Photoionization and Photoelectron Study of the

       Co Atom

       H. Huang, H. Wang, Z. Luo, X. Shi, Y.-C. Chang, C. Y. Ng

       Astrophys. J., 833, 205 (2016)

11.  Branching Ratio Measurements for Vacuum Ultraviolet Photodissociation of 12C16O

       H. Gao, Y. Song, Y.-C. Chang, X. Shi, Q.-Z. Yin, R. C. Wiens, W. M. Jackson, C. Y. Ng 

       J. Phys. Chem. A, 117, 6185 (2013)

10.  Rovibronically selected and resolved two-color laser photoionization and photoelectron study of 

       cobalt carbide cation

       H. Huang, Y.-C. Chang, Z. Luo, X. Shi, C.-S. Lam, K.-C. Lau, and C. Y. Ng

       J. Chem. Phys.,138, 094301 (2013)

9.    High-level ab initiopredictions for the ionization energy, bond dissociation energies and

       heats of formation of cobalt carbide (CoC) and its cation (CoC+)

       K.-C. Lau, Y. Pan, C.-S. Lam, H. Huang, Y.-C. Chang, Z. Luo, X. Shi, and C. Y. Ng

       J. Chem. Phys., 138, 094302 (2013)

8.    A High-Resolution Photoionization and Photoelectron Study of 58Ni using a Vacuum

       Ultraviolet Laser

       X. Shi, H. Huang, B. Jacobson, Y. C. Chang, Q.-Z. Yin, and C. Y. Ng

       Astrophys. J., 747, 20 (2012)

7.    Branching Ratio measurements of the Predissociation of 12C16O by Time-Slice Velocity-

       Map Ion Imaging in the Vacuum Ultraviolet region from 108 000 to 110 500 cm−1

       H. Gao, Y. Song, L. Yang, X. Shi, Q.-Z. Yin, C. Y. Ng, and W. M. Jackson

       J. Chem. Phys., 137, 034305 (2012)

6.    Communication: Branching Ratio measurements in the Predissociation of 12C16O by 

       Time-Slice Velocity-Map Ion Imaging in the Vacuum Ultraviolet region

       H. Gao, Y. Song, L. Yang, X. Shi, Q.-Z. Yin, C. Y. Ng, and W. M. Jackson

       J. Chem. Phys. 135, 221101 (2011)

5.    Rovibronically Selected and Resolved Two-color Laser Photoionization and Photoelectron

       study of Nickel Carbide Cation

       Y. C. Chang, X. Shi, K-C Lau, Q.-Z. Yin, H. T. Liou, and C. Y. Ng

       J. Chem. Phys. 133, 054310 (2010)

4.    High-level ab initiopredictions for the ionization energy, bond dissociation energies and

       heats of formations of Nickel carbide (NiC) and its cation (NiC+)

       K.-C. Lau, Y. C. Chang, X. Shi, C. Y. Ng

       J. Chem. Phys., 133, 114304 (2010)

3.    Comment on ''Experimental test of self-shielding in vacuumultraviolet photodissociation of CO''

       Q.-Z. Yin, X. Shi, C. Chang, C. Y. Ng

       Science, 324, 1516 (2009)

2.    The temporal changes in the emission spectrum of Comet 9P/ Tempel 1 after Deep Impact

       W. M. Jackson, X. Yang, X. Shi, and A. L. Cochran

       Astrophys. J., 698, 1609 (2009)

1.    Quantum chemical study of cyclic dipeptides

       Y. Zhu, M. Tang, X. Shi, Y. Zhao

       Int. J. Quantum Chem., 3, 745 (2007)

bottom of page