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29.  Proximity Labeling Expansion Microscopy (PL-ExM) resolves structure of the interactome

      S. Park, X. Wang, X. Li, X. Huang, K.C. Fong, C. Yu, A.A. Tran, L. Scipioni, Z. Dai, L. Huang, X. Shi
      [bioRxiv Nov. 13, 2023]

28. Label-Retention Expansion Microscopy (LR-ExM) for Enhanced Fluorescent Signals using 

      Trifunctional Probes

      Y. Zhuang, X. Shi

      Curr Protoc. 2024 Jan;4(1):e973. doi: 10.1002/cpz1.973.  


27. Expansion Microscopy of Ciliary Proteins
S. Park, X. Shi
      Cilia: Methods and Protocols, 79-88 (2023)

      Part of the Methods in Molecular Biology book series (MIMB, volume 2725)


26. Expansion microscopy: A chemical approach for super-resolution microscopy

      Y. Zhuang, X. Shi

      Current Opinion in Structural Biology 81, 102614 (2023)


25. Label-Retention Expansion Microscopy (LR-ExM) Enables Super-Resolution Imaging and High- 

      Efficiency Labeling

      S. Park, Y. Zhuang, X. Shi

      joVE. 188, e63793 (2022)

24. Label-retention expansion microscopy

      X. Shi * #, Q. Li *, Z. Dai, A.A.Tran, S. Feng, A.D. Ramirez, Z. Lin, X. Wang, T.T. Chow, J. Chen

      D. Kumar, A. McColloch, J.F. Reiter, E.J. Huang, I.B. Seiple #, B. Huang #

      J. Cell Biol. 220 (9): e202105067 (2021). [bioRxiv 2019]

      ✶✶  image on the table of contents page ✶✶  |  [highlighted by PreLight]

23. Polarized endosome dynamics engage cytoplasmic Par-3 that recruits dynein during 

      asymmetric cell division

      X. Zhao, J.Q. Garcia, K. Tong, X. Chen, B. Yang, Q. Li, Z. Dai, X. Shi, I.B. Seiple, B. Huang, S. Guo

      Science Advance, 7, eabg1244 (2021) 

22. A ciliopathy complex builds distal appendages to initiate ciliogenesis

      D. Kumar, A. Rains, V. Herranz-Pérez, Q. Lu, X. Shi, D.L. Swaney, E. Stevenson, N.J. Krogan,

      B. Huang, C. Westlake, J.M. Garcia-Verdugo, B. Yoder, J.F. Reiter

      J. Cell Biol. 220 (9): e202011133 (2021)[bioRxiv 2021]

21. Kinase-mediated RAS signaling via membraneless cytoplasmic protein granules

      A. Tulpule*, J. Guan*, D.S. Neel*, H.R. Allegakoen, Y.P. Lin, D. Brown, Y.-T. Chou,

      A. Heslin, N. Chatterjee, S. Perati, S. Menon, T.A. Nguyen, J. Debnath, A.D. Ramirez, 

      X. ShiB. Yang, S. Feng, S. Makhija, B. Huang#, T.G. Bivona#

      Cell,184, 2649 (2021) 

20. Neurotoxic microglia promote TDP-43 proteinopathy in progranulin deficiency

      J. Zhang, D. Velmeshev, K. Hashimoto, Y.-H. Huang, J. W. Hofmann, X. Shi, J. Chen,

      A. M. Leidal, J. G. Dishart, M. K. Cahill, K. W. Kelley, S. A. Liddelow, W. W. Seeley,

      B. L. Miller, T. C. Walther, R. V. Farese Jr., J. P. Taylor, E. M. Ullian, B. Huang, J. Debnath, 

      T. Wittmann, A. R. Kriegstein & E. J. Huang

      Nature, 588, 459 (2020)

19. Nanotopography enhances dynamic remodeling of tight junction proteins through cytosolic 


      X. Huang, X. Shi, M.E. Hansen, C.L. Nemeth, A. Ceili, B. Huang, T. Mauro, M. Koval, T.A. Desai 

      ACS Nano, 14, 13192 (2020).

Before UCI

18.  Deformed alignment of super-resolution images for semi-flexible structures

       X. Shi, G. Garcia, Y. Wang, J. Reiter, B. Huang

       PLoS ONE, 14, e0212735 (2019)


17.  Branching ratio measurements of the predissociation of 12C16O by time-slice velocity-map                       ion imaging in the energy region from 106,250 to 107,800 cm-1. 

       X. Shi*, H. Gao*, Q.-Z. Yin, Y.-C. Chang, R. C. Wiens, W. M. Jackson, C. Y. Ng

       J. Phys. Chem. A, 122, 8136 (2018)

       ✶✶ cover image ✶✶ 

16.  Local enrichment of HP1alpha at telomeres alters their structure and regulation of telomere                       protection
T. Chow, X. Shi, J.H. Wei, J. Guan, G. Stadler, B. Huang, E. Blackburn
       Nat. Commun., 9, 3583 (2018)


15.  Super-resolution microscopy reveals that disruption of ciliary transition zone architecture is                         a cause of Joubert syndrome
X. Shi*, G. Garcia*, J. C. Van De Weghe, R. McGorty, G. J. Pazour, D. Doherty,

       B. Huang#, J. F. Reiter#
       Nat. Cell Biol., 19, 1178 (2017). [bioRxiv 2017]
​       ✶✶ cover image ✶✶


14.  Branching Ratios in Vacuum Ultraviolet Photodissociation of CO and N2: Implications for Oxygen               and Nitrogen Isotopic Compositions of the Solar Nebula

       X. Shi, Q.-Z. Yin, H. Gao, Y. C. Chang, W. M. Jackson, R. Wiensand C. Y. Ng

       Astrophys. J., 850, 48 (2017)

13.  Tracking multiple genomic elements using correlative CRISPR imaging and sequential DNA FISH

       J. Guan, H. Liu, X. Shi, S. Feng, B. Huang

       Biophys. J., 112,1077 (2017) 

       ✶✶ New and Notable ✶✶

12.  A High-Resolution Vacuum Ultraviolet Laser Photoionization and Photoelectron Study

       of the Co Atom

       H. Huang, H. Wang, Z. Luo, X. Shi, Y.-C. Chang, C. Y. Ng

       Astrophys. J., 833, 205 (2016)

11.  Branching Ratio Measurements for Vacuum Ultraviolet Photodissociation of 12C16O

       H. Gao, Y. Song, Y.-C. Chang, X. Shi, Q.-Z. Yin, R. C. Wiens, W. M. Jackson, C. Y. Ng 

       J. Phys. Chem. A, 117, 6185 (2013)

10.  Rovibronically selected and resolved two-color laser photoionization and photoelectron study of         

       cobalt carbide cation

       H. Huang, Y.-C. Chang, Z. Luo, X. Shi, C.-S. Lam, K.-C. Lau, and C. Y. Ng

       J. Chem. Phys.,138, 094301 (2013)

9.    High-level ab initiopredictions for the ionization energy, bond dissociation energies and heats of                 formation of cobalt carbide (CoC) and its cation (CoC+)

       K.-C. Lau, Y. Pan, C.-S. Lam, H. Huang, Y.-C. Chang, Z. Luo, X. Shi, and C. Y. Ng

       J. Chem. Phys., 138, 094302 (2013)

8.    A High-Resolution Photoionization and Photoelectron Study of 58Ni using a Vacuum Ultraviolet Laser

       X. Shi, H. Huang, B. Jacobson, Y. C. Chang, Q.-Z. Yin, and C. Y. Ng

       Astrophys. J., 747, 20 (2012)

7.    Branching Ratio measurements of the Predissociation of 12C16O by Time-Slice Velocity-Map Ion               Imaging in the Vacuum Ultraviolet region from 108 000 to 110 500 cm−1

       H. Gao, Y. Song, L. Yang, X. Shi, Q.-Z. Yin, C. Y. Ng, and W. M. Jackson

       J. Chem. Phys., 137, 034305 (2012)

6.    Communication: Branching Ratio measurements in the Predissociation of 12C16O by Time-Slice               Velocity-Map Ion Imaging in the Vacuum Ultraviolet region

       H. Gao, Y. Song, L. Yang, X. Shi, Q.-Z. Yin, C. Y. Ng, and W. M. Jackson

       J. Chem. Phys. 135, 221101 (2011)

5.    Rovibronically Selected and Resolved Two-color Laser Photoionization and Photoelectron study                 of Nickel Carbide Cation

       Y. C. Chang, X. Shi, K-C Lau, Q.-Z. Yin, H. T. Liou, and C. Y. Ng

       J. Chem. Phys. 133, 054310 (2010)

4.    High-level ab initiopredictions for the ionization energy, bond dissociation energies and heats of                 formations of Nickel carbide (NiC) and its cation (NiC+)

       K.-C. Lau, Y. C. Chang, X. Shi, C. Y. Ng

       J. Chem. Phys., 133, 114304 (2010)

3.    Comment on ''Experimental test of self-shielding in vacuumultraviolet photodissociation of CO''

       Q.-Z. Yin, X. Shi, C. Chang, C. Y. Ng

       Science, 324, 1516 (2009)

2.    The temporal changes in the emission spectrum of Comet 9P/ Tempel 1 after Deep Impact

       W. M. Jackson, X. Yang, X. Shi, and A. L. Cochran

       Astrophys. J., 698, 1609 (2009)

1.    Quantum chemical study of cyclic dipeptides

       Y. Zhu, M. Tang, X. Shi, Y. Zhao

       Int. J. Quantum Chem., 3, 745 (2007)

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